I ran GO Enrichment Analysis on the DE genes lists produced with the conditional cutoff (using logFC> |2| or logFC><0, depending on the amount of genes obtained with these cutoffs)

GO Plots

Pairwise comparisons

3dpa-1dpa

Upregulated
BP


CC


MF


Downregulated
MF


6dpa-3dpa

Upregulated
BP


CC


MF


Downregulated
BP


CC


MF


9dpa-6dpa

Upregulated
BP


CC


MF


Downregulated
CC


12dpa-9dpa

Upregulated
BP


CC


MF


Downregulated
BP


15dpa-12dpa

Upregulated
BP


MF


Downregulated
BP


CC


MF


21dpa-15dpa

Downregulated
BP


CC


MF


28dpa-21dpa

Upregulated
CC


MF


intact-28dpa

Upregulated
BP


CC


MF


Downregulated
BP


CC


MF